PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca47538.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family LBD
Protein Properties Length: 256aa    MW: 27254.9 Da    PI: 8.3916
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca47538.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.74.1e-294104196
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++C ++p++      ++q++++ +++k++G++ +++l+++ p++ r+++++sl+ye++ r+ +P+yG+vg+++++q++l+q+++e 
  Dca47538.1   4 SCNGCRVLRKGCNEKCKIRPCLdwiksSDSQANATVFLAKFYGRAGLINLISSGPDHLRPALFRSLLYESCGRMVNPIYGSVGLLWSGQWHLCQAAVES 102
                 6*********************9998777889****************************************************************998 PP

      DUF260  95 al 96 
                 +l
  Dca47538.1 103 VL 104
                 76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.0583109IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-234102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCNEKCK IRPCLDWIKS SDSQANATVF LAKFYGRAGL INLISSGPDH  60
LRPALFRSLL YESCGRMVNP IYGSVGLLWS GQWHLCQAAV ESVLKGLPIT PIPIEDAANP  120
PPVKGAYDIR HVPKEKASTS ADSDQTKPNQ NRFKRTGGVI KPKPTKLSSC AAKAIVALDI  180
LGKSGDVGAV NGSSTSHDSS LSHPDEVATD GNSNGNSYSS MVSMETTEAD VVERANGDGG  240
GAYLGLDLEL SLRFTA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693111.11e-101PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8865e-74LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A0K9REJ11e-101A0A0K9REJ1_SPIOL; Uncharacterized protein
STRINGVIT_14s0006g02950.t014e-85(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.17e-74LOB domain-containing protein 42